Publications

Google Scholar publications

• Expanded encyclopaedias of DNA elements in the human and mouse genomes
  JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... (2020)
  Nature 583 (7818), 699-710, 2020
  Cited by: 2381
• Perspectives on ENCODE
  MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... (2020)
  Nature 583 (7818), 693-698, 2020
  Cited by: 203
• RNA editing in nascent RNA affects pre-mRNA splicing
  YHE Hsiao, JH Bahn, Y Yang, X Lin, S Tran, EW Yang, ... (2018)
  Genome research 28 (6), 812-823, 2018
  Cited by: 172
• Regulation of RNA editing by RNA-binding proteins in human cells
  G Quinones-Valdez, SS Tran, HI Jun, JH Bahn, EW Yang, L Zhan, ... (2019)
  Communications biology 2 (1), 19, 2019
  Cited by: 152
• Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA
  EW Yang, JH Bahn, EYH Hsiao, BX Tan, Y Sun, T Fu, B Zhou, ... (2019)
  Nature communications 10 (1), 1338, 2019
  Cited by: 63
• RNA editing in cancer impacts mRNA abundance in immune response pathways
  TW Chan, T Fu, JH Bahn, HI Jun, JH Lee, G Quinones-Valdez, C Cheng, ... (2020)
  Genome biology 21 (1), 268, 2020
  Cited by: 55
• hnRNPM protects against the dsRNA-mediated interferon response by repressing LINE-associated cryptic splicing
  R Zheng, M Dunlap, GOM Bobkov, C Gonzalez-Figueroa, KJ Patel, J Lyu, ... (2024)
  Molecular cell 84 (11), 2087-2103. e8, 2024
  Cited by: 43
• L-GIREMI uncovers RNA editing sites in long-read RNA-seq
  Z Liu, G Quinones-Valdez, T Fu, E Huang, M Choudhury, F Reese, ... (2023)
  Genome Biology 24 (1), 171, 2023
  Cited by: 26
• scAllele: a versatile tool for the detection and analysis of variants in scRNA-seq
  G Quinones-Valdez, T Fu, TW Chan, X Xiao (2022)
  Science Advances 8 (35), eabn6398, 2022
  Cited by: 19
• Splicing-specific transcriptome-wide association uncovers genetic mechanisms for schizophrenia
  JL Hervoso, K Amoah, J Dodson, M Choudhury, A Bhattacharya, ... (2024)
  The American Journal of Human Genetics 111 (8), 1573-1587, 2024
  Cited by: 17
• Long-read RNA-seq demarcates cis- and trans-directed alternative RNA splicing
  G Quinones-Valdez, K Amoah, X Xiao (2025)
  Nature Communications 16 (1), 9603, 2025
  Cited by: 11
• Allele-specific splicing modulates protein isoforms and Alzheimer’s risk
  AJ King, K Amoah, L Zhang, JH Bahn, RM Barney, G Quinones-Valdez, ... (2026)
  Genome Research, 2026.02. 13.705796, 2026
  Cited by: 1
• Immune landscape of the affected brain in Rasmussen encephalitis
  G Quinones-Valdez, JW Chang, SD Magaki, HV Vinters, N Salamon, ... (2026)
  Scientific Reports, 2026
• Single-cell tracing identifies a stage-spanning progenitor linked to chemoresistance in Down syndrome myeloid leukemia
  K Rohde, S Frenz-Wiessner, Y Wang, G Quinones-Valdez, H Issa, ... (2026)
  Klinische Pädiatrie 238 (03), 0069, 2026
• Allele-specific alternative polyadenylation links noncoding genetic variation to Alzheimer’s disease risk
  RM Barney, G Quinones-Valdez, AJ King, K Amoah, W Wang, X Xiao (2026)
  bioRxiv, 2026
• The Encyclopedia of DNA Elements
  ENCODE Project Consortium, TE Reddy (2026)
  bioRxiv, 2026.07. 06.731365, 2026
• Single-cell tracing of myeloid leukemia evolution in down syndrome reveals a latent progenitor bridging disease onset, progression and relapse
  S Frenz-Wiessner, Y Wang, K Rohde, G Quinones-Valdez, H Issa, ... (2025)
  Blood 146, 1472, 2025
• 3160–TRACING THE ORIGIN AND EVOLUTION OF MYELOID LEUKEMIA IN DOWN SYNDROME
  S Frenz-Wiessner, Y Wang, GQ Valdez, P Mack, H Issa, K Rohde, ... (2025)
  Experimental Hematology 151, 105101, 2025
• Function and Regulation of Nucleotide Variants in RNA
  GQ Valdez (2021)
  University of California, Los Angeles, 2021
• Functional Roles of Single Nucleotide Variants in Alternative Splicing
  YH Hsiao (2018)
  UCLA, 2018